
******************************************************
CHECKPOINT: Resuming analysis from 15cephala_nozorro.phy.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 149766
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holy2a02208.rc.fas.harvard.edu (AVX, FMA3, 251 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 32 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_nozorro.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    574072 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Sun Aug 11 09:39:28 2019
Kernel:  AVX+FMA - 32 threads (64 CPU cores detected)

Reading alignment file 15cephala_nozorro.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 842203 columns and 480355 patterns (255739 informative sites, 432072 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       20.55%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          27.56%    failed      0.00%
   3  Diniatys_dentifer_MCZ_Mala_387511               45.39%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            33.98%    failed      0.00%
   5  Navanax_inermis_MCZ_388934                20.09%    failed      0.00%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.58%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        20.51%    failed      0.00%
   8  Siphopteron_nigromarginatum_MCZ_3875353   20.38%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          26.71%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    55.38%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.98%    failed      0.00%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   62.25%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           29.56%    failed      0.00%
  14  Clione_limacina_antarctica_SRR1505107                         31.99%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              54.87%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 70.53%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 37.77%    failed      0.00%
  18  Mnestia_sp._MCZ_Mala_387530                40.19%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       32.40%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                22.65%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          30.35%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   20.69%    failed      0.00%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      83.70%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     80.07%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              75.79%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         69.01%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               95.69%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     42.51%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000118736 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 15cephala_nozorro.phy.model
NOTE: ModelFinder requires 22787 MB RAM!
ModelFinder will test 206 protein models (sample size: 842203) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    10176591.114 52  20353286.227 20353286.234 20353891.703
  2  Dayhoff+R2    10240959.606 53  20482025.212 20482025.218 20482642.332
  3  Dayhoff+R3    10161427.952 55  20322965.904 20322965.912 20323606.312
  4  Dayhoff+R4    10150819.065 57  20301752.130 20301752.137 20302415.825
  5  Dayhoff+R5    10149199.229 59  20298516.458 20298516.466 20299203.440
  6  Dayhoff+R6    10149051.314 61  20298224.628 20298224.637 20298934.898
  7  Dayhoff+R7    10149007.349 63  20298140.698 20298140.707 20298874.256
  8  Dayhoff+R8    10148934.291 65  20297998.581 20297998.592 20298755.427
  9  Dayhoff+R9    10148892.136 67  20297918.271 20297918.282 20298698.404
 10  Dayhoff+R10   10148882.378 69  20297902.757 20297902.768 20298706.177
 11  Dayhoff       10993753.013 51  21987608.026 21987608.033 21988201.859
 12  Dayhoff+F+G4  10152450.167 71  20305042.334 20305042.346 20305869.042
 13  Dayhoff+F+R2  10219813.733 72  20439771.465 20439771.478 20440609.817
 14  Dayhoff+F+R3  10137179.633 74  20274507.266 20274507.279 20275368.905
 15  Dayhoff+F+R4  10125949.669 76  20252051.338 20252051.352 20252936.265
 16  Dayhoff+F+R5  10124181.275 78  20248518.549 20248518.564 20249426.764
 17  Dayhoff+F+R6  10123912.359 80  20247984.718 20247984.733 20248916.220
 18  Dayhoff+F+R7  10123867.304 82  20247898.609 20247898.625 20248853.398
 19  Dayhoff+F+R8  10123847.349 84  20247862.699 20247862.716 20248840.776
 20  Dayhoff+F+R9  10123835.238 86  20247842.476 20247842.493 20248843.840
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     10987942.758 70  21976025.515 21976025.527 21976840.580
 23  JTT+G4        10113604.140 52  20227312.281 20227312.288 20227917.757
 24  JTT+R2        10170307.672 53  20340721.345 20340721.351 20341338.465
 25  JTT+R3        10097663.443 55  20195436.886 20195436.894 20196077.294
 26  JTT+R4        10089033.412 57  20178180.824 20178180.832 20178844.520
 27  JTT+R5        10088090.001 59  20176298.002 20176298.010 20176984.985
 28  JTT+R6        10088028.238 61  20176178.475 20176178.484 20176888.746
 29  JTT+R7        10088013.828 63  20176153.657 20176153.666 20176887.215
 30  JTT+R8        10088008.636 65  20176147.272 20176147.282 20176904.117
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           10920123.131 51  21840348.261 21840348.267 21840942.094
 34  JTT+F+G4      10105647.234 71  20211436.468 20211436.480 20212263.176
 35  JTT+F+R2      10162548.529 72  20325241.057 20325241.070 20326079.409
 36  JTT+F+R3      10089452.624 74  20179053.247 20179053.260 20179914.886
 37  JTT+F+R4      10080789.127 76  20161730.255 20161730.268 20162615.182
 38  JTT+F+R5      10079758.441 78  20159672.881 20159672.896 20160581.096
 39  JTT+F+R6      10079695.968 80  20159551.936 20159551.951 20160483.438
 40  JTT+F+R7      10079680.244 82  20159524.489 20159524.505 20160479.278
 41  JTT+F+R8      10079672.280 84  20159512.559 20159512.576 20160490.636
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         10915823.645 70  21831787.290 21831787.302 21832602.355
 45  WAG+G4        10138157.333 52  20276418.667 20276418.673 20277024.143
 46  WAG+R2        10189927.094 53  20379960.187 20379960.194 20380577.307
 47  WAG+R3        10123821.541 55  20247753.083 20247753.090 20248393.491
 48  WAG+R4        10116198.770 57  20232511.541 20232511.549 20233175.236
 49  WAG+R5        10115387.708 59  20230893.417 20230893.425 20231580.400
 50  WAG+R6        10115339.232 61  20230800.464 20230800.473 20231510.735
 51  WAG+R7        10115317.879 63  20230761.759 20230761.769 20231495.317
 52  WAG+R8        10115308.985 65  20230747.969 20230747.979 20231504.815
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           10917028.025 51  21834158.049 21834158.055 21834751.882
 56  WAG+F+G4      10141258.497 71  20282658.994 20282659.006 20283485.702
 57  WAG+F+R2      10194728.130 72  20389600.259 20389600.272 20390438.611
 58  WAG+F+R3      10126742.435 74  20253632.870 20253632.883 20254494.510
 59  WAG+F+R4      10118617.587 76  20237387.174 20237387.188 20238272.101
 60  WAG+F+R5      10117682.011 78  20235520.022 20235520.036 20236428.236
 61  WAG+F+R6      10117607.974 80  20235375.949 20235375.964 20236307.451
 62  WAG+F+R7      10117582.701 82  20235329.401 20235329.417 20236284.191
 63  WAG+F+R8      10117574.906 84  20235317.811 20235317.828 20236295.889
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         10929107.295 70  21858354.590 21858354.602 21859169.655
 67  VT+G4         10162154.831 52  20324413.662 20324413.669 20325019.138
 68  VT+R2         10207874.661 53  20415855.321 20415855.328 20416472.442
 69  VT+R3         10149106.594 55  20298323.189 20298323.196 20298963.596
 70  VT+R4         10143188.731 57  20286491.463 20286491.470 20287155.158
 71  VT+R5         10142738.597 59  20285595.194 20285595.202 20286282.177
 72  VT+R6         10142721.472 61  20285564.944 20285564.953 20286275.214
 73  VT+R7         10142709.492 63  20285544.985 20285544.994 20286278.543
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            10921848.831 51  21843799.662 21843799.668 21844393.494
 78  VT+F+G4       10159265.659 71  20318673.319 20318673.331 20319500.027
 79  VT+F+R2       10204842.865 72  20409829.730 20409829.742 20410668.082
 80  VT+F+R3       10146199.244 74  20292546.487 20292546.500 20293408.127
 81  VT+F+R4       10140194.442 76  20280540.884 20280540.898 20281425.811
 82  VT+F+R5       10139692.844 78  20279541.688 20279541.702 20280449.902
 83  VT+F+R6       10139673.318 80  20279506.637 20279506.652 20280438.139
 84  VT+F+R7       10139659.646 82  20279483.293 20279483.309 20280438.082
 85  VT+F+R8       10139655.026 84  20279478.052 20279478.069 20280456.129
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          10918097.902 70  21836335.804 21836335.816 21837150.869
 89  LG+G4         10121723.285 52  20243550.569 20243550.576 20244156.046
 90  LG+R2         10184000.538 53  20368107.076 20368107.083 20368724.196
 91  LG+R3         10105933.476 55  20211976.953 20211976.960 20212617.360
 92  LG+R4         10095700.638 57  20191515.276 20191515.284 20192178.971
 93  LG+R5         10094446.038 59  20189010.076 20189010.084 20189697.059
 94  LG+R6         10094305.650 61  20188733.299 20188733.308 20189443.569
 95  LG+R7         10094286.347 63  20188698.693 20188698.703 20189432.251
 96  LG+R8         10094280.846 65  20188691.692 20188691.702 20189448.537
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            10957203.522 51  21914509.043 21914509.050 21915102.876
100  LG+F+G4       10105759.425 71  20211660.851 20211660.863 20212487.559
101  LG+F+R2       10166503.988 72  20333151.975 20333151.988 20333990.327
102  LG+F+R3       10089509.779 74  20179167.557 20179167.570 20180029.197
103  LG+F+R4       10079320.036 76  20158792.072 20158792.086 20159676.999
104  LG+F+R5       10077985.371 78  20156126.741 20156126.756 20157034.956
105  LG+F+R6       10077837.542 80  20155835.083 20155835.099 20156766.585
106  LG+F+R7       10077811.496 82  20155786.992 20155787.008 20156741.781
107  LG+F+R8       10077804.453 84  20155776.906 20155776.923 20156754.984
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          10931477.748 70  21863095.496 21863095.508 21863910.560
111  DCMut+G4      10177315.289 52  20354734.577 20354734.584 20355340.053
112  DCMut+R2      10241429.179 53  20482964.358 20482964.365 20483581.478
113  DCMut+R3      10162185.666 55  20324481.332 20324481.340 20325121.740
114  DCMut+R4      10151621.174 57  20303356.348 20303356.356 20304020.044
115  DCMut+R5      10150000.530 59  20300119.059 20300119.068 20300806.042
116  DCMut+R6      10149710.711 61  20299543.422 20299543.431 20300253.692
117  DCMut+R7      10149679.735 63  20299485.470 20299485.479 20300219.028
118  DCMut+R8      10149674.642 65  20299479.284 20299479.294 20300236.129
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         10993406.412 51  21986914.825 21986914.831 21987508.657
122  DCMut+F+G4    10152986.454 71  20306114.908 20306114.921 20306941.617
123  DCMut+F+R2    10220072.323 72  20440288.645 20440288.658 20441126.997
124  DCMut+F+R3    10137745.027 74  20275638.054 20275638.067 20276499.693
125  DCMut+F+R4    10126562.172 76  20253276.344 20253276.358 20254161.271
126  DCMut+F+R5    10124803.598 78  20249763.196 20249763.211 20250671.410
127  DCMut+F+R6    10124480.418 80  20249120.835 20249120.850 20250052.337
128  DCMut+F+R7    10124453.928 82  20249071.855 20249071.872 20250026.645
129  DCMut+F+R8    10124449.012 84  20249066.023 20249066.040 20250044.100
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       10987220.252 70  21974580.505 21974580.516 21975395.569
133  PMB+G4        10269876.157 52  20539856.314 20539856.320 20540461.790
134  PMB+R2        10315751.708 53  20631609.415 20631609.422 20632226.535
135  PMB+R3        10257479.390 55  20515068.780 20515068.788 20515709.188
136  PMB+R4        10252047.434 57  20504208.868 20504208.875 20504872.563
137  PMB+R5        10251692.134 59  20503502.267 20503502.276 20504189.250
138  PMB+R6        10251676.711 61  20503475.422 20503475.431 20504185.692
139  PMB+R7        10251666.579 63  20503459.158 20503459.168 20504192.716
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           11034982.118 51  22070066.237 22070066.243 22070660.069
144  PMB+F+G4      10246116.356 71  20492374.711 20492374.723 20493201.419
145  PMB+F+R2      10292134.454 72  20584412.908 20584412.921 20585251.260
146  PMB+F+R3      10233088.085 74  20466324.170 20466324.184 20467185.810
147  PMB+F+R4      10227185.635 76  20454523.270 20454523.284 20455408.197
148  PMB+F+R5      10226698.058 78  20453552.117 20453552.131 20454460.331
149  PMB+F+R6      10226675.732 80  20453511.464 20453511.480 20454442.966
150  PMB+F+R7      10226663.939 82  20453491.878 20453491.894 20454446.668
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         11009444.170 70  22019028.340 22019028.352 22019843.404
155  JTTDCMut+G4   10113618.446 52  20227340.892 20227340.899 20227946.369
156  JTTDCMut+R2   10170473.861 53  20341053.723 20341053.729 20341670.843
157  JTTDCMut+R3   10097649.055 55  20195408.110 20195408.117 20196048.518
158  JTTDCMut+R4   10088996.651 57  20178107.301 20178107.309 20178770.996
159  JTTDCMut+R5   10088042.292 59  20176202.584 20176202.593 20176889.567
160  JTTDCMut+R6   10087972.948 61  20176067.896 20176067.905 20176778.166
161  JTTDCMut+R7   10087961.189 63  20176048.377 20176048.387 20176781.935
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      10919025.568 51  21838153.136 21838153.142 21838746.968
166  JTTDCMut+F+G4 10105938.465 71  20212018.931 20212018.943 20212845.639
167  JTTDCMut+F+R2 10163095.672 72  20326335.344 20326335.356 20327173.696
168  JTTDCMut+F+R3 10089728.346 74  20179604.691 20179604.705 20180466.331
169  JTTDCMut+F+R4 10081021.467 76  20162194.934 20162194.948 20163079.861
170  JTTDCMut+F+R5 10079981.856 78  20160119.712 20160119.727 20161027.927
171  JTTDCMut+F+R6 10079905.172 80  20159970.345 20159970.360 20160901.847
172  JTTDCMut+F+R7 10079892.443 82  20159948.887 20159948.903 20160903.676
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    10915865.541 70  21831871.082 21831871.094 21832686.146
177  Blosum62+G4   10274916.228 52  20549936.456 20549936.463 20550541.933
178  Blosum62+R2   10322062.157 53  20644230.314 20644230.321 20644847.434
179  Blosum62+R3   10262607.064 55  20525324.128 20525324.135 20525964.536
180  Blosum62+R4   10256726.917 57  20513567.834 20513567.842 20514231.530
181  Blosum62+R5   10256254.717 59  20512627.435 20512627.443 20513314.418
182  Blosum62+R6   10256234.300 61  20512590.600 20512590.609 20513300.870
183  Blosum62+R7   10256223.893 63  20512573.786 20512573.796 20513307.344
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      11041042.687 51  22082187.374 22082187.380 22082781.206
188  Blosum62+F+G4 10251837.784 71  20503817.567 20503817.580 20504644.276
189  Blosum62+F+R2 10299142.512 72  20598429.024 20598429.036 20599267.376
190  Blosum62+F+R3 10238924.375 74  20477996.750 20477996.763 20478858.389
191  Blosum62+F+R4 10232451.126 76  20465054.251 20465054.265 20465939.178
192  Blosum62+F+R5 10231881.758 78  20463919.516 20463919.530 20464827.730
193  Blosum62+F+R6 10231846.910 80  20463853.820 20463853.835 20464785.322
194  Blosum62+F+R7 10231835.888 82  20463835.777 20463835.793 20464790.566
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    11016059.599 70  22032259.198 22032259.210 22033074.262
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          10161752.787 52  20323609.573 20323609.580 20324215.049
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          10133076.971 57  20266267.941 20266267.949 20266931.636
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        10134026.416 52  20268156.832 20268156.838 20268762.308
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}

******************************************************
CHECKPOINT: Resuming analysis from 15cephala_nozorro.phy.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 266552
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holy2a07108.rc.fas.harvard.edu (AVX, FMA3, 251 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 32 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_nozorro.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    574072 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Aug 14 14:19:00 2019
Kernel:  AVX+FMA - 32 threads (64 CPU cores detected)

Reading alignment file 15cephala_nozorro.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 842203 columns and 480355 patterns (255739 informative sites, 432072 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       20.55%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          27.56%    failed      0.00%
   3  Diniatys_dentifer_MCZ_Mala_387511               45.39%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            33.98%    failed      0.00%
   5  Navanax_inermis_MCZ_388934                20.09%    failed      0.00%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.58%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        20.51%    failed      0.00%
   8  Siphopteron_nigromarginatum_MCZ_3875353   20.38%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          26.71%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    55.38%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.98%    failed      0.00%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   62.25%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           29.56%    failed      0.00%
  14  Clione_limacina_antarctica_SRR1505107                         31.99%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              54.87%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 70.53%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 37.77%    failed      0.00%
  18  Mnestia_sp._MCZ_Mala_387530                40.19%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       32.40%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                22.65%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          30.35%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   20.69%    failed      0.00%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      83.70%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     80.07%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              75.79%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         69.01%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               95.69%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     42.51%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000118736 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 15cephala_nozorro.phy.model
NOTE: ModelFinder requires 22787 MB RAM!
ModelFinder will test 206 protein models (sample size: 842203) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    10176591.114 52  20353286.227 20353286.234 20353891.703
  2  Dayhoff+R2    10240959.606 53  20482025.212 20482025.218 20482642.332
  3  Dayhoff+R3    10161427.952 55  20322965.904 20322965.912 20323606.312
  4  Dayhoff+R4    10150819.065 57  20301752.130 20301752.137 20302415.825
  5  Dayhoff+R5    10149199.229 59  20298516.458 20298516.466 20299203.440
  6  Dayhoff+R6    10149051.314 61  20298224.628 20298224.637 20298934.898
  7  Dayhoff+R7    10149007.349 63  20298140.698 20298140.707 20298874.256
  8  Dayhoff+R8    10148934.291 65  20297998.581 20297998.592 20298755.427
  9  Dayhoff+R9    10148892.136 67  20297918.271 20297918.282 20298698.404
 10  Dayhoff+R10   10148882.378 69  20297902.757 20297902.768 20298706.177
 11  Dayhoff       10993753.013 51  21987608.026 21987608.033 21988201.859
 12  Dayhoff+F+G4  10152450.167 71  20305042.334 20305042.346 20305869.042
 13  Dayhoff+F+R2  10219813.733 72  20439771.465 20439771.478 20440609.817
 14  Dayhoff+F+R3  10137179.633 74  20274507.266 20274507.279 20275368.905
 15  Dayhoff+F+R4  10125949.669 76  20252051.338 20252051.352 20252936.265
 16  Dayhoff+F+R5  10124181.275 78  20248518.549 20248518.564 20249426.764
 17  Dayhoff+F+R6  10123912.359 80  20247984.718 20247984.733 20248916.220
 18  Dayhoff+F+R7  10123867.304 82  20247898.609 20247898.625 20248853.398
 19  Dayhoff+F+R8  10123847.349 84  20247862.699 20247862.716 20248840.776
 20  Dayhoff+F+R9  10123835.238 86  20247842.476 20247842.494 20248843.841
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     10987942.758 70  21976025.515 21976025.527 21976840.580
 23  JTT+G4        10113604.140 52  20227312.281 20227312.288 20227917.757
 24  JTT+R2        10170307.672 53  20340721.345 20340721.351 20341338.465
 25  JTT+R3        10097663.443 55  20195436.886 20195436.894 20196077.294
 26  JTT+R4        10089033.412 57  20178180.824 20178180.832 20178844.520
 27  JTT+R5        10088090.001 59  20176298.002 20176298.010 20176984.985
 28  JTT+R6        10088028.238 61  20176178.475 20176178.484 20176888.746
 29  JTT+R7        10088013.828 63  20176153.657 20176153.666 20176887.215
 30  JTT+R8        10088008.636 65  20176147.272 20176147.282 20176904.117
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           10920123.130 51  21840348.261 21840348.267 21840942.094
 34  JTT+F+G4      10105647.234 71  20211436.468 20211436.480 20212263.176
 35  JTT+F+R2      10162548.529 72  20325241.057 20325241.069 20326079.409
 36  JTT+F+R3      10089452.624 74  20179053.247 20179053.260 20179914.886
 37  JTT+F+R4      10080789.127 76  20161730.255 20161730.268 20162615.182
 38  JTT+F+R5      10079758.441 78  20159672.881 20159672.896 20160581.096
 39  JTT+F+R6      10079695.968 80  20159551.936 20159551.951 20160483.438
 40  JTT+F+R7      10079680.244 82  20159524.489 20159524.505 20160479.278
 41  JTT+F+R8      10079672.280 84  20159512.559 20159512.576 20160490.636
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         10915823.645 70  21831787.290 21831787.302 21832602.355
 45  WAG+G4        10138157.333 52  20276418.667 20276418.674 20277024.143
 46  WAG+R2        10189927.094 53  20379960.187 20379960.194 20380577.307
 47  WAG+R3        10123821.542 55  20247753.083 20247753.090 20248393.491
 48  WAG+R4        10116198.771 57  20232511.541 20232511.549 20233175.236
 49  WAG+R5        10115387.708 59  20230893.417 20230893.425 20231580.400
 50  WAG+R6        10115339.232 61  20230800.464 20230800.473 20231510.735
 51  WAG+R7        10115317.879 63  20230761.759 20230761.769 20231495.317
 52  WAG+R8        10115308.985 65  20230747.969 20230747.979 20231504.815
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           10917028.024 51  21834158.049 21834158.055 21834751.882
 56  WAG+F+G4      10141258.497 71  20282658.994 20282659.006 20283485.702
 57  WAG+F+R2      10194728.130 72  20389600.259 20389600.272 20390438.611
 58  WAG+F+R3      10126742.435 74  20253632.870 20253632.883 20254494.510
 59  WAG+F+R4      10118617.587 76  20237387.174 20237387.188 20238272.101
 60  WAG+F+R5      10117682.011 78  20235520.022 20235520.036 20236428.236
 61  WAG+F+R6      10117607.974 80  20235375.949 20235375.964 20236307.451
 62  WAG+F+R7      10117582.701 82  20235329.401 20235329.417 20236284.191
 63  WAG+F+R8      10117574.906 84  20235317.811 20235317.828 20236295.889
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         10929107.295 70  21858354.590 21858354.602 21859169.655
 67  VT+G4         10162154.831 52  20324413.662 20324413.669 20325019.138
 68  VT+R2         10207874.661 53  20415855.321 20415855.328 20416472.442
 69  VT+R3         10149106.594 55  20298323.189 20298323.196 20298963.596
 70  VT+R4         10143188.731 57  20286491.463 20286491.470 20287155.158
 71  VT+R5         10142738.597 59  20285595.194 20285595.202 20286282.177
 72  VT+R6         10142721.472 61  20285564.944 20285564.953 20286275.214
 73  VT+R7         10142709.492 63  20285544.985 20285544.995 20286278.543
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            10921848.831 51  21843799.662 21843799.668 21844393.494
 78  VT+F+G4       10159265.659 71  20318673.319 20318673.331 20319500.027
 79  VT+F+R2       10204842.865 72  20409829.730 20409829.742 20410668.082
 80  VT+F+R3       10146199.244 74  20292546.487 20292546.501 20293408.127
 81  VT+F+R4       10140194.442 76  20280540.884 20280540.898 20281425.811
 82  VT+F+R5       10139692.844 78  20279541.688 20279541.702 20280449.902
 83  VT+F+R6       10139673.318 80  20279506.637 20279506.652 20280438.139
 84  VT+F+R7       10139659.646 82  20279483.293 20279483.309 20280438.082
 85  VT+F+R8       10139655.026 84  20279478.052 20279478.069 20280456.129
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          10918097.902 70  21836335.804 21836335.816 21837150.869
 89  LG+G4         10121723.285 52  20243550.569 20243550.576 20244156.046
 90  LG+R2         10184000.538 53  20368107.076 20368107.083 20368724.196
 91  LG+R3         10105933.476 55  20211976.953 20211976.960 20212617.360
 92  LG+R4         10095700.638 57  20191515.276 20191515.284 20192178.971
 93  LG+R5         10094446.038 59  20189010.076 20189010.084 20189697.059
 94  LG+R6         10094305.649 61  20188733.299 20188733.308 20189443.569
 95  LG+R7         10094286.347 63  20188698.693 20188698.703 20189432.251
 96  LG+R8         10094280.846 65  20188691.692 20188691.702 20189448.537
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            10957203.522 51  21914509.043 21914509.049 21915102.876
100  LG+F+G4       10105759.425 71  20211660.851 20211660.863 20212487.559
101  LG+F+R2       10166503.988 72  20333151.975 20333151.987 20333990.327
102  LG+F+R3       10089509.779 74  20179167.557 20179167.571 20180029.197
103  LG+F+R4       10079320.036 76  20158792.072 20158792.086 20159676.999
104  LG+F+R5       10077985.371 78  20156126.741 20156126.756 20157034.956
105  LG+F+R6       10077837.542 80  20155835.083 20155835.099 20156766.585
106  LG+F+R7       10077811.496 82  20155786.992 20155787.008 20156741.781
107  LG+F+R8       10077804.453 84  20155776.906 20155776.923 20156754.984
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          10931477.748 70  21863095.496 21863095.508 21863910.560
111  DCMut+G4      10177315.288 52  20354734.577 20354734.584 20355340.053
112  DCMut+R2      10241429.179 53  20482964.358 20482964.365 20483581.478
113  DCMut+R3      10162185.666 55  20324481.332 20324481.340 20325121.740
114  DCMut+R4      10151621.174 57  20303356.348 20303356.356 20304020.043
115  DCMut+R5      10150000.530 59  20300119.059 20300119.068 20300806.042
116  DCMut+R6      10149710.711 61  20299543.422 20299543.431 20300253.692
117  DCMut+R7      10149679.735 63  20299485.470 20299485.479 20300219.028
118  DCMut+R8      10149674.642 65  20299479.284 20299479.294 20300236.129
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         10993406.412 51  21986914.825 21986914.831 21987508.657
122  DCMut+F+G4    10152986.454 71  20306114.908 20306114.921 20306941.617
123  DCMut+F+R2    10220072.322 72  20440288.645 20440288.657 20441126.997
124  DCMut+F+R3    10137745.027 74  20275638.054 20275638.067 20276499.693
125  DCMut+F+R4    10126562.172 76  20253276.344 20253276.358 20254161.271
126  DCMut+F+R5    10124803.598 78  20249763.196 20249763.211 20250671.411
127  DCMut+F+R6    10124480.418 80  20249120.835 20249120.850 20250052.337
128  DCMut+F+R7    10124453.928 82  20249071.855 20249071.872 20250026.645
129  DCMut+F+R8    10124449.012 84  20249066.023 20249066.040 20250044.100
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       10987220.252 70  21974580.505 21974580.516 21975395.569
133  PMB+G4        10269876.157 52  20539856.314 20539856.320 20540461.790
134  PMB+R2        10315751.707 53  20631609.415 20631609.422 20632226.535
135  PMB+R3        10257479.390 55  20515068.780 20515068.788 20515709.188
136  PMB+R4        10252047.434 57  20504208.868 20504208.875 20504872.563
137  PMB+R5        10251692.134 59  20503502.267 20503502.276 20504189.250
138  PMB+R6        10251676.711 61  20503475.422 20503475.431 20504185.692
139  PMB+R7        10251666.579 63  20503459.158 20503459.168 20504192.716
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           11034982.118 51  22070066.237 22070066.243 22070660.069
144  PMB+F+G4      10246116.356 71  20492374.711 20492374.723 20493201.419
145  PMB+F+R2      10292134.454 72  20584412.908 20584412.921 20585251.260
146  PMB+F+R3      10233088.085 74  20466324.170 20466324.184 20467185.810
147  PMB+F+R4      10227185.635 76  20454523.270 20454523.283 20455408.197
148  PMB+F+R5      10226698.058 78  20453552.117 20453552.131 20454460.331
149  PMB+F+R6      10226675.732 80  20453511.464 20453511.480 20454442.966
150  PMB+F+R7      10226663.939 82  20453491.878 20453491.894 20454446.668
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         11009444.170 70  22019028.340 22019028.352 22019843.404
155  JTTDCMut+G4   10113618.446 52  20227340.892 20227340.899 20227946.369
156  JTTDCMut+R2   10170473.861 53  20341053.723 20341053.729 20341670.843
157  JTTDCMut+R3   10097649.055 55  20195408.110 20195408.117 20196048.517
158  JTTDCMut+R4   10088996.651 57  20178107.301 20178107.309 20178770.996
159  JTTDCMut+R5   10088042.292 59  20176202.584 20176202.593 20176889.567
160  JTTDCMut+R6   10087972.948 61  20176067.896 20176067.905 20176778.166
161  JTTDCMut+R7   10087961.189 63  20176048.377 20176048.387 20176781.935
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      10919025.568 51  21838153.136 21838153.142 21838746.968
166  JTTDCMut+F+G4 10105938.465 71  20212018.931 20212018.943 20212845.639
167  JTTDCMut+F+R2 10163095.672 72  20326335.344 20326335.356 20327173.696
168  JTTDCMut+F+R3 10089728.346 74  20179604.691 20179604.705 20180466.331
169  JTTDCMut+F+R4 10081021.467 76  20162194.934 20162194.948 20163079.861
170  JTTDCMut+F+R5 10079981.856 78  20160119.712 20160119.727 20161027.927
171  JTTDCMut+F+R6 10079905.172 80  20159970.345 20159970.360 20160901.847
172  JTTDCMut+F+R7 10079892.443 82  20159948.887 20159948.903 20160903.676
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    10915865.541 70  21831871.082 21831871.094 21832686.146
177  Blosum62+G4   10274916.228 52  20549936.456 20549936.463 20550541.933
178  Blosum62+R2   10322062.157 53  20644230.314 20644230.321 20644847.434
179  Blosum62+R3   10262607.064 55  20525324.128 20525324.135 20525964.535
180  Blosum62+R4   10256726.917 57  20513567.834 20513567.842 20514231.530
181  Blosum62+R5   10256254.717 59  20512627.435 20512627.443 20513314.418
182  Blosum62+R6   10256234.300 61  20512590.600 20512590.609 20513300.870
183  Blosum62+R7   10256223.893 63  20512573.786 20512573.796 20513307.344
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      11041042.687 51  22082187.374 22082187.380 22082781.206
188  Blosum62+F+G4 10251837.784 71  20503817.567 20503817.580 20504644.276
189  Blosum62+F+R2 10299142.512 72  20598429.024 20598429.036 20599267.376
190  Blosum62+F+R3 10238924.375 74  20477996.750 20477996.763 20478858.389
191  Blosum62+F+R4 10232451.126 76  20465054.251 20465054.265 20465939.178
192  Blosum62+F+R5 10231881.758 78  20463919.516 20463919.530 20464827.730
193  Blosum62+F+R6 10231846.910 80  20463853.820 20463853.835 20464785.322
194  Blosum62+F+R7 10231835.888 82  20463835.777 20463835.793 20464790.566
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    11016059.599 70  22032259.198 22032259.210 22033074.263
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          10161752.787 52  20323609.573 20323609.580 20324215.050
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          10133076.971 57  20266267.941 20266267.949 20266931.636
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        10134026.416 52  20268156.832 20268156.838 20268762.308
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        10075858.700 52  20151821.401 20151821.407 20152426.877
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        10069005.047 52  20138114.095 20138114.101 20138719.571
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
STACK TRACE FOR DEBUGGING:
1   double* aligned_alloc<double>(unsigned long)
2   PhyloTree::initializeAllPartialLh(int&, int&, PhyloNode*, PhyloNode*)
3   PhyloTree::initializeAllPartialLh()
4   testModel(Params&, PhyloTree*, std::vector<ModelInfo, std::allocator<ModelInfo> >&, std::ostream&, ModelsBlock*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)
5   initializeParams(Params&, IQTree&, std::vector<ModelInfo, std::allocator<ModelInfo> >&, ModelsBlock*)
6   runTreeReconstruction(Params&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, IQTree&, std::vector<ModelInfo, std::allocator<ModelInfo> >&)
7   runPhyloAnalysis(Params&, Checkpoint*)
8   main()
9   __libc_start_main()
ERROR: Not enough memory, allocation of 307440793632 bytes failed (bad_alloc)

******************************************************
CHECKPOINT: Resuming analysis from 15cephala_nozorro.phy.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 69851
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holybigmem07.rc.fas.harvard.edu (AVX, FMA3, 503 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 32 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_nozorro.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    574072 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Fri Aug 16 12:14:32 2019
Kernel:  AVX+FMA - 32 threads (64 CPU cores detected)

Reading alignment file 15cephala_nozorro.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 842203 columns and 480355 patterns (255739 informative sites, 432072 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       20.55%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          27.56%    failed      0.00%
   3  Diniatys_dentifer_MCZ_Mala_387511               45.39%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            33.98%    failed      0.00%
   5  Navanax_inermis_MCZ_388934                20.09%    failed      0.00%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.58%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        20.51%    failed      0.00%
   8  Siphopteron_nigromarginatum_MCZ_3875353   20.38%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          26.71%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    55.38%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.98%    failed      0.00%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   62.25%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           29.56%    failed      0.00%
  14  Clione_limacina_antarctica_SRR1505107                         31.99%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              54.87%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 70.53%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 37.77%    failed      0.00%
  18  Mnestia_sp._MCZ_Mala_387530                40.19%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       32.40%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                22.65%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          30.35%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   20.69%    failed      0.00%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      83.70%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     80.07%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              75.79%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         69.01%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               95.69%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     42.51%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000118736 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 15cephala_nozorro.phy.model
NOTE: ModelFinder requires 22787 MB RAM!
ModelFinder will test 206 protein models (sample size: 842203) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    10176591.114 52  20353286.227 20353286.234 20353891.703
  2  Dayhoff+R2    10240959.606 53  20482025.212 20482025.218 20482642.332
  3  Dayhoff+R3    10161427.952 55  20322965.904 20322965.912 20323606.312
  4  Dayhoff+R4    10150819.065 57  20301752.130 20301752.137 20302415.825
  5  Dayhoff+R5    10149199.229 59  20298516.458 20298516.466 20299203.440
  6  Dayhoff+R6    10149051.314 61  20298224.628 20298224.637 20298934.898
  7  Dayhoff+R7    10149007.349 63  20298140.698 20298140.707 20298874.256
  8  Dayhoff+R8    10148934.291 65  20297998.581 20297998.592 20298755.427
  9  Dayhoff+R9    10148892.136 67  20297918.271 20297918.282 20298698.404
 10  Dayhoff+R10   10148882.378 69  20297902.757 20297902.768 20298706.177
 11  Dayhoff       10993753.013 51  21987608.026 21987608.033 21988201.859
 12  Dayhoff+F+G4  10152450.167 71  20305042.334 20305042.346 20305869.042
 13  Dayhoff+F+R2  10219813.733 72  20439771.465 20439771.478 20440609.817
 14  Dayhoff+F+R3  10137179.633 74  20274507.266 20274507.279 20275368.905
 15  Dayhoff+F+R4  10125949.669 76  20252051.338 20252051.352 20252936.265
 16  Dayhoff+F+R5  10124181.275 78  20248518.549 20248518.564 20249426.764
 17  Dayhoff+F+R6  10123912.359 80  20247984.718 20247984.733 20248916.220
 18  Dayhoff+F+R7  10123867.304 82  20247898.609 20247898.625 20248853.398
 19  Dayhoff+F+R8  10123847.349 84  20247862.699 20247862.716 20248840.776
 20  Dayhoff+F+R9  10123835.238 86  20247842.476 20247842.494 20248843.841
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     10987942.758 70  21976025.515 21976025.527 21976840.580
 23  JTT+G4        10113604.140 52  20227312.281 20227312.288 20227917.757
 24  JTT+R2        10170307.672 53  20340721.345 20340721.351 20341338.465
 25  JTT+R3        10097663.443 55  20195436.886 20195436.894 20196077.294
 26  JTT+R4        10089033.412 57  20178180.824 20178180.832 20178844.520
 27  JTT+R5        10088090.001 59  20176298.002 20176298.010 20176984.985
 28  JTT+R6        10088028.238 61  20176178.475 20176178.484 20176888.746
 29  JTT+R7        10088013.828 63  20176153.657 20176153.666 20176887.215
 30  JTT+R8        10088008.636 65  20176147.272 20176147.282 20176904.117
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           10920123.130 51  21840348.261 21840348.267 21840942.094
 34  JTT+F+G4      10105647.234 71  20211436.468 20211436.480 20212263.176
 35  JTT+F+R2      10162548.529 72  20325241.057 20325241.069 20326079.409
 36  JTT+F+R3      10089452.624 74  20179053.247 20179053.260 20179914.886
 37  JTT+F+R4      10080789.127 76  20161730.255 20161730.268 20162615.182
 38  JTT+F+R5      10079758.441 78  20159672.881 20159672.896 20160581.096
 39  JTT+F+R6      10079695.968 80  20159551.936 20159551.951 20160483.438
 40  JTT+F+R7      10079680.244 82  20159524.489 20159524.505 20160479.278
 41  JTT+F+R8      10079672.280 84  20159512.559 20159512.576 20160490.636
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         10915823.645 70  21831787.290 21831787.302 21832602.355
 45  WAG+G4        10138157.333 52  20276418.667 20276418.674 20277024.143
 46  WAG+R2        10189927.094 53  20379960.187 20379960.194 20380577.307
 47  WAG+R3        10123821.542 55  20247753.083 20247753.090 20248393.491
 48  WAG+R4        10116198.771 57  20232511.541 20232511.549 20233175.236
 49  WAG+R5        10115387.708 59  20230893.417 20230893.425 20231580.400
 50  WAG+R6        10115339.232 61  20230800.464 20230800.473 20231510.735
 51  WAG+R7        10115317.879 63  20230761.759 20230761.769 20231495.317
 52  WAG+R8        10115308.985 65  20230747.969 20230747.979 20231504.815
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           10917028.024 51  21834158.049 21834158.055 21834751.882
 56  WAG+F+G4      10141258.497 71  20282658.994 20282659.006 20283485.702
 57  WAG+F+R2      10194728.130 72  20389600.259 20389600.272 20390438.611
 58  WAG+F+R3      10126742.435 74  20253632.870 20253632.883 20254494.510
 59  WAG+F+R4      10118617.587 76  20237387.174 20237387.188 20238272.101
 60  WAG+F+R5      10117682.011 78  20235520.022 20235520.036 20236428.236
 61  WAG+F+R6      10117607.974 80  20235375.949 20235375.964 20236307.451
 62  WAG+F+R7      10117582.701 82  20235329.401 20235329.417 20236284.191
 63  WAG+F+R8      10117574.906 84  20235317.811 20235317.828 20236295.889
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         10929107.295 70  21858354.590 21858354.602 21859169.655
 67  VT+G4         10162154.831 52  20324413.662 20324413.669 20325019.138
 68  VT+R2         10207874.661 53  20415855.321 20415855.328 20416472.442
 69  VT+R3         10149106.594 55  20298323.189 20298323.196 20298963.596
 70  VT+R4         10143188.731 57  20286491.463 20286491.470 20287155.158
 71  VT+R5         10142738.597 59  20285595.194 20285595.202 20286282.177
 72  VT+R6         10142721.472 61  20285564.944 20285564.953 20286275.214
 73  VT+R7         10142709.492 63  20285544.985 20285544.995 20286278.543
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            10921848.831 51  21843799.662 21843799.668 21844393.494
 78  VT+F+G4       10159265.659 71  20318673.319 20318673.331 20319500.027
 79  VT+F+R2       10204842.865 72  20409829.730 20409829.742 20410668.082
 80  VT+F+R3       10146199.244 74  20292546.487 20292546.501 20293408.127
 81  VT+F+R4       10140194.442 76  20280540.884 20280540.898 20281425.811
 82  VT+F+R5       10139692.844 78  20279541.688 20279541.702 20280449.902
 83  VT+F+R6       10139673.318 80  20279506.637 20279506.652 20280438.139
 84  VT+F+R7       10139659.646 82  20279483.293 20279483.309 20280438.082
 85  VT+F+R8       10139655.026 84  20279478.052 20279478.069 20280456.129
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          10918097.902 70  21836335.804 21836335.816 21837150.869
 89  LG+G4         10121723.285 52  20243550.569 20243550.576 20244156.046
 90  LG+R2         10184000.538 53  20368107.076 20368107.083 20368724.196
 91  LG+R3         10105933.476 55  20211976.953 20211976.960 20212617.360
 92  LG+R4         10095700.638 57  20191515.276 20191515.284 20192178.971
 93  LG+R5         10094446.038 59  20189010.076 20189010.084 20189697.059
 94  LG+R6         10094305.649 61  20188733.299 20188733.308 20189443.569
 95  LG+R7         10094286.347 63  20188698.693 20188698.703 20189432.251
 96  LG+R8         10094280.846 65  20188691.692 20188691.702 20189448.537
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            10957203.522 51  21914509.043 21914509.049 21915102.876
100  LG+F+G4       10105759.425 71  20211660.851 20211660.863 20212487.559
101  LG+F+R2       10166503.988 72  20333151.975 20333151.987 20333990.327
102  LG+F+R3       10089509.779 74  20179167.557 20179167.571 20180029.197
103  LG+F+R4       10079320.036 76  20158792.072 20158792.086 20159676.999
104  LG+F+R5       10077985.371 78  20156126.741 20156126.756 20157034.956
105  LG+F+R6       10077837.542 80  20155835.083 20155835.099 20156766.585
106  LG+F+R7       10077811.496 82  20155786.992 20155787.008 20156741.781
107  LG+F+R8       10077804.453 84  20155776.906 20155776.923 20156754.984
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          10931477.748 70  21863095.496 21863095.508 21863910.560
111  DCMut+G4      10177315.288 52  20354734.577 20354734.584 20355340.053
112  DCMut+R2      10241429.179 53  20482964.358 20482964.365 20483581.478
113  DCMut+R3      10162185.666 55  20324481.332 20324481.340 20325121.740
114  DCMut+R4      10151621.174 57  20303356.348 20303356.356 20304020.043
115  DCMut+R5      10150000.530 59  20300119.059 20300119.068 20300806.042
116  DCMut+R6      10149710.711 61  20299543.422 20299543.431 20300253.692
117  DCMut+R7      10149679.735 63  20299485.470 20299485.479 20300219.028
118  DCMut+R8      10149674.642 65  20299479.284 20299479.294 20300236.129
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         10993406.412 51  21986914.825 21986914.831 21987508.657
122  DCMut+F+G4    10152986.454 71  20306114.908 20306114.921 20306941.617
123  DCMut+F+R2    10220072.322 72  20440288.645 20440288.657 20441126.997
124  DCMut+F+R3    10137745.027 74  20275638.054 20275638.067 20276499.693
125  DCMut+F+R4    10126562.172 76  20253276.344 20253276.358 20254161.271
126  DCMut+F+R5    10124803.598 78  20249763.196 20249763.211 20250671.411
127  DCMut+F+R6    10124480.418 80  20249120.835 20249120.850 20250052.337
128  DCMut+F+R7    10124453.928 82  20249071.855 20249071.872 20250026.645
129  DCMut+F+R8    10124449.012 84  20249066.023 20249066.040 20250044.100
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       10987220.252 70  21974580.505 21974580.516 21975395.569
133  PMB+G4        10269876.157 52  20539856.314 20539856.320 20540461.790
134  PMB+R2        10315751.707 53  20631609.415 20631609.422 20632226.535
135  PMB+R3        10257479.390 55  20515068.780 20515068.788 20515709.188
136  PMB+R4        10252047.434 57  20504208.868 20504208.875 20504872.563
137  PMB+R5        10251692.134 59  20503502.267 20503502.276 20504189.250
138  PMB+R6        10251676.711 61  20503475.422 20503475.431 20504185.692
139  PMB+R7        10251666.579 63  20503459.158 20503459.168 20504192.716
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           11034982.118 51  22070066.237 22070066.243 22070660.069
144  PMB+F+G4      10246116.356 71  20492374.711 20492374.723 20493201.419
145  PMB+F+R2      10292134.454 72  20584412.908 20584412.921 20585251.260
146  PMB+F+R3      10233088.085 74  20466324.170 20466324.184 20467185.810
147  PMB+F+R4      10227185.635 76  20454523.270 20454523.283 20455408.197
148  PMB+F+R5      10226698.058 78  20453552.117 20453552.131 20454460.331
149  PMB+F+R6      10226675.732 80  20453511.464 20453511.480 20454442.966
150  PMB+F+R7      10226663.939 82  20453491.878 20453491.894 20454446.668
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         11009444.170 70  22019028.340 22019028.352 22019843.404
155  JTTDCMut+G4   10113618.446 52  20227340.892 20227340.899 20227946.369
156  JTTDCMut+R2   10170473.861 53  20341053.723 20341053.729 20341670.843
157  JTTDCMut+R3   10097649.055 55  20195408.110 20195408.117 20196048.517
158  JTTDCMut+R4   10088996.651 57  20178107.301 20178107.309 20178770.996
159  JTTDCMut+R5   10088042.292 59  20176202.584 20176202.593 20176889.567
160  JTTDCMut+R6   10087972.948 61  20176067.896 20176067.905 20176778.166
161  JTTDCMut+R7   10087961.189 63  20176048.377 20176048.387 20176781.935
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      10919025.568 51  21838153.136 21838153.142 21838746.968
166  JTTDCMut+F+G4 10105938.465 71  20212018.931 20212018.943 20212845.639
167  JTTDCMut+F+R2 10163095.672 72  20326335.344 20326335.356 20327173.696
168  JTTDCMut+F+R3 10089728.346 74  20179604.691 20179604.705 20180466.331
169  JTTDCMut+F+R4 10081021.467 76  20162194.934 20162194.948 20163079.861
170  JTTDCMut+F+R5 10079981.856 78  20160119.712 20160119.727 20161027.927
171  JTTDCMut+F+R6 10079905.172 80  20159970.345 20159970.360 20160901.847
172  JTTDCMut+F+R7 10079892.443 82  20159948.887 20159948.903 20160903.676
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    10915865.541 70  21831871.082 21831871.094 21832686.146
177  Blosum62+G4   10274916.228 52  20549936.456 20549936.463 20550541.933
178  Blosum62+R2   10322062.157 53  20644230.314 20644230.321 20644847.434
179  Blosum62+R3   10262607.064 55  20525324.128 20525324.135 20525964.535
180  Blosum62+R4   10256726.917 57  20513567.834 20513567.842 20514231.530
181  Blosum62+R5   10256254.717 59  20512627.435 20512627.443 20513314.418
182  Blosum62+R6   10256234.300 61  20512590.600 20512590.609 20513300.870
183  Blosum62+R7   10256223.893 63  20512573.786 20512573.796 20513307.344
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      11041042.687 51  22082187.374 22082187.380 22082781.206
188  Blosum62+F+G4 10251837.784 71  20503817.567 20503817.580 20504644.276
189  Blosum62+F+R2 10299142.512 72  20598429.024 20598429.036 20599267.376
190  Blosum62+F+R3 10238924.375 74  20477996.750 20477996.763 20478858.389
191  Blosum62+F+R4 10232451.126 76  20465054.251 20465054.265 20465939.178
192  Blosum62+F+R5 10231881.758 78  20463919.516 20463919.530 20464827.730
193  Blosum62+F+R6 10231846.910 80  20463853.820 20463853.835 20464785.322
194  Blosum62+F+R7 10231835.888 82  20463835.777 20463835.793 20464790.566
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    11016059.599 70  22032259.198 22032259.210 22033074.263
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          10161752.787 52  20323609.573 20323609.580 20324215.050
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          10133076.971 57  20266267.941 20266267.949 20266931.636
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        10134026.416 52  20268156.832 20268156.838 20268762.308
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        10075858.700 52  20151821.401 20151821.407 20152426.877
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        10069005.047 52  20138114.095 20138114.101 20138719.571
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
204  LG+C40        10063605.806 52  20127315.612 20127315.619 20127921.089
Model LG+C50 is alias for LG+POISSON+G+FMIX{C50pi1:1:0.0164297003,C50pi2:1:0.0273175755,C50pi3:1:0.0460247610,C50pi4:1:0.0084864734,C50pi5:1:0.0125389252,C50pi6:1:0.0343549036,C50pi7:1:0.0130241102,C50pi8:1:0.0094755681,C50pi9:1:0.0190040551,C50pi10:1:0.0151902354,C50pi11:1:0.0320534760,C50pi12:1:0.0210059850,C50pi13:1:0.0237408547,C50pi14:1:0.0239841203,C50pi15:1:0.0213748021,C50pi16:1:0.0210717705,C50pi17:1:0.0050241805,C50pi18:1:0.0166262276,C50pi19:1:0.0143945956,C50pi20:1:0.0104391130,C50pi21:1:0.0107628277,C50pi22:1:0.0148818171,C50pi23:1:0.0321480239,C50pi24:1:0.0145477978,C50pi25:1:0.0332355807,C50pi26:1:0.0143190281,C50pi27:1:0.0234478734,C50pi28:1:0.0183044983,C50pi29:1:0.0403269452,C50pi30:1:0.0135629530,C50pi31:1:0.0091880799,C50pi32:1:0.0158270022,C50pi33:1:0.0121019379,C50pi34:1:0.0353560982,C50pi35:1:0.0404495617,C50pi36:1:0.0104569232,C50pi37:1:0.0146187792,C50pi38:1:0.0093984095,C50pi39:1:0.0146773809,C50pi40:1:0.0201635562,C50pi41:1:0.0255640273,C50pi42:1:0.0039486842,C50pi43:1:0.0393652608,C50pi44:1:0.0056415419,C50pi45:1:0.0382833580,C50pi46:1:0.0039735086,C50pi47:1:0.0140269355,C50pi48:1:0.0476703673,C50pi49:1:0.0204062788,C50pi50:1:0.0117835304}
205  LG+C50        10059693.722 52  20119491.443 20119491.450 20120096.920
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}
206  LG+C60        10056120.261 52  20112344.523 20112344.529 20112949.999
Akaike Information Criterion:           LG+C60
Corrected Akaike Information Criterion: LG+C60
Bayesian Information Criterion:         LG+C60
Best-fit model: LG+C60 chosen according to BIC

All model information printed to 15cephala_nozorro.phy.model
CPU time for ModelFinder: 1290608.760 seconds (358h:30m:8s)
Wall-clock time for ModelFinder: 53913.510 seconds (14h:58m:33s)
Generating 1500 samples for ultrafast bootstrap (seed: 574072)...
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}

NOTE: 483667 MB RAM (472 GB) is required!
WARNING: Memory required per CPU-core (14.7604 GB) is higher than your computer RAM per CPU-core (7 GB), thus multiple runs may exceed RAM!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -10324018.461
2. Current log-likelihood: -10074875.600
3. Current log-likelihood: -10057203.484
4. Current log-likelihood: -10056215.152
5. Current log-likelihood: -10056133.865
6. Current log-likelihood: -10056122.737
7. Current log-likelihood: -10056120.759
8. Current log-likelihood: -10056120.370
Optimal log-likelihood: -10056120.291
Mixture weights: 0.017 0.021 0.028 0.007 0.014 0.007 0.015 0.007 0.002 0.010 0.023 0.006 0.013 0.020 0.007 0.012 0.007 0.043 0.032 0.022 0.010 0.015 0.013 0.015 0.024 0.013 0.022 0.025 0.021 0.011 0.008 0.013 0.009 0.047 0.044 0.032 0.040 0.015 0.010 0.021 0.015 0.010 0.023 0.012 0.007 0.001 0.034 0.011 0.013 0.012 0.026 0.006 0.010 0.014 0.022 0.020 0.004 0.011 0.013 0.012
Gamma shape alpha: 0.260
Parameters optimization took 8 rounds (20389.097 sec)
Computing ML distances based on estimated model parameters... 30.606 sec
Computing BIONJ tree...
0.008 seconds
Log-likelihood of BIONJ tree: -10056507.423
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 8 parsimony trees... 75.967 second
Computing log-likelihood of 8 initial trees ... 13785.126 seconds
Current best score: -10056120.291

Do NNI search on 10 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -10056120.266

******************************************************
CHECKPOINT: Resuming analysis from 15cephala_nozorro.phy.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 971721
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holybigmem07.rc.fas.harvard.edu (AVX, FMA3, 503 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 64 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_nozorro.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    574072 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon Aug 19 08:11:16 2019
Kernel:  AVX+FMA - 64 threads (64 CPU cores detected)

WARNING: Command-line argument `64` differs from checkpoint `32`
WARNING: Command-line differs from checkpoint!
Reading alignment file 15cephala_nozorro.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 842203 columns and 480355 patterns (255739 informative sites, 432072 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       20.55%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          27.56%    failed      0.00%
   3  Diniatys_dentifer_MCZ_Mala_387511               45.39%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            33.98%    failed      0.00%
   5  Navanax_inermis_MCZ_388934                20.09%    failed      0.00%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.58%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        20.51%    failed      0.00%
   8  Siphopteron_nigromarginatum_MCZ_3875353   20.38%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          26.71%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    55.38%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.98%    failed      0.00%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   62.25%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           29.56%    failed      0.00%
  14  Clione_limacina_antarctica_SRR1505107                         31.99%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              54.87%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 70.53%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 37.77%    failed      0.00%
  18  Mnestia_sp._MCZ_Mala_387530                40.19%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       32.40%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                22.65%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          30.35%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   20.69%    failed      0.00%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      83.70%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     80.07%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              75.79%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         69.01%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               95.69%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     42.51%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000118736 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 15cephala_nozorro.phy.model
NOTE: ModelFinder requires 22787 MB RAM!
ModelFinder will test 206 protein models (sample size: 842203) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    10176591.114 52  20353286.227 20353286.234 20353891.703
  2  Dayhoff+R2    10240959.606 53  20482025.212 20482025.218 20482642.332
  3  Dayhoff+R3    10161427.952 55  20322965.904 20322965.912 20323606.312
  4  Dayhoff+R4    10150819.065 57  20301752.130 20301752.137 20302415.825
  5  Dayhoff+R5    10149199.229 59  20298516.458 20298516.466 20299203.440
  6  Dayhoff+R6    10149051.314 61  20298224.628 20298224.637 20298934.898
  7  Dayhoff+R7    10149007.349 63  20298140.698 20298140.707 20298874.256
  8  Dayhoff+R8    10148934.291 65  20297998.581 20297998.592 20298755.427
  9  Dayhoff+R9    10148892.136 67  20297918.271 20297918.282 20298698.404
 10  Dayhoff+R10   10148882.378 69  20297902.757 20297902.768 20298706.177
 11  Dayhoff       10993753.013 51  21987608.026 21987608.033 21988201.859
 12  Dayhoff+F+G4  10152450.167 71  20305042.334 20305042.346 20305869.042
 13  Dayhoff+F+R2  10219813.733 72  20439771.465 20439771.478 20440609.817
 14  Dayhoff+F+R3  10137179.633 74  20274507.266 20274507.279 20275368.905
 15  Dayhoff+F+R4  10125949.669 76  20252051.338 20252051.352 20252936.265
 16  Dayhoff+F+R5  10124181.275 78  20248518.549 20248518.564 20249426.764
 17  Dayhoff+F+R6  10123912.359 80  20247984.718 20247984.733 20248916.220
 18  Dayhoff+F+R7  10123867.304 82  20247898.609 20247898.625 20248853.398
 19  Dayhoff+F+R8  10123847.349 84  20247862.699 20247862.716 20248840.776
 20  Dayhoff+F+R9  10123835.238 86  20247842.476 20247842.494 20248843.841
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     10987942.758 70  21976025.515 21976025.527 21976840.580
 23  JTT+G4        10113604.140 52  20227312.281 20227312.288 20227917.757
 24  JTT+R2        10170307.672 53  20340721.345 20340721.351 20341338.465
 25  JTT+R3        10097663.443 55  20195436.886 20195436.894 20196077.294
 26  JTT+R4        10089033.412 57  20178180.824 20178180.832 20178844.520
 27  JTT+R5        10088090.001 59  20176298.002 20176298.010 20176984.985
 28  JTT+R6        10088028.238 61  20176178.475 20176178.484 20176888.746
 29  JTT+R7        10088013.828 63  20176153.657 20176153.666 20176887.215
 30  JTT+R8        10088008.636 65  20176147.272 20176147.282 20176904.117
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           10920123.130 51  21840348.261 21840348.267 21840942.094
 34  JTT+F+G4      10105647.234 71  20211436.468 20211436.480 20212263.176
 35  JTT+F+R2      10162548.529 72  20325241.057 20325241.069 20326079.409
 36  JTT+F+R3      10089452.624 74  20179053.247 20179053.260 20179914.886
 37  JTT+F+R4      10080789.127 76  20161730.255 20161730.268 20162615.182
 38  JTT+F+R5      10079758.441 78  20159672.881 20159672.896 20160581.096
 39  JTT+F+R6      10079695.968 80  20159551.936 20159551.951 20160483.438
 40  JTT+F+R7      10079680.244 82  20159524.489 20159524.505 20160479.278
 41  JTT+F+R8      10079672.280 84  20159512.559 20159512.576 20160490.636
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         10915823.645 70  21831787.290 21831787.302 21832602.355
 45  WAG+G4        10138157.333 52  20276418.667 20276418.674 20277024.143
 46  WAG+R2        10189927.094 53  20379960.187 20379960.194 20380577.307
 47  WAG+R3        10123821.542 55  20247753.083 20247753.090 20248393.491
 48  WAG+R4        10116198.771 57  20232511.541 20232511.549 20233175.236
 49  WAG+R5        10115387.708 59  20230893.417 20230893.425 20231580.400
 50  WAG+R6        10115339.232 61  20230800.464 20230800.473 20231510.735
 51  WAG+R7        10115317.879 63  20230761.759 20230761.769 20231495.317
 52  WAG+R8        10115308.985 65  20230747.969 20230747.979 20231504.815
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           10917028.024 51  21834158.049 21834158.055 21834751.882
 56  WAG+F+G4      10141258.497 71  20282658.994 20282659.006 20283485.702
 57  WAG+F+R2      10194728.130 72  20389600.259 20389600.272 20390438.611
 58  WAG+F+R3      10126742.435 74  20253632.870 20253632.883 20254494.510
 59  WAG+F+R4      10118617.587 76  20237387.174 20237387.188 20238272.101
 60  WAG+F+R5      10117682.011 78  20235520.022 20235520.036 20236428.236
 61  WAG+F+R6      10117607.974 80  20235375.949 20235375.964 20236307.451
 62  WAG+F+R7      10117582.701 82  20235329.401 20235329.417 20236284.191
 63  WAG+F+R8      10117574.906 84  20235317.811 20235317.828 20236295.889
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         10929107.295 70  21858354.590 21858354.602 21859169.655
 67  VT+G4         10162154.831 52  20324413.662 20324413.669 20325019.138
 68  VT+R2         10207874.661 53  20415855.321 20415855.328 20416472.442
 69  VT+R3         10149106.594 55  20298323.189 20298323.196 20298963.596
 70  VT+R4         10143188.731 57  20286491.463 20286491.470 20287155.158
 71  VT+R5         10142738.597 59  20285595.194 20285595.202 20286282.177
 72  VT+R6         10142721.472 61  20285564.944 20285564.953 20286275.214
 73  VT+R7         10142709.492 63  20285544.985 20285544.995 20286278.543
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            10921848.831 51  21843799.662 21843799.668 21844393.494
 78  VT+F+G4       10159265.659 71  20318673.319 20318673.331 20319500.027
 79  VT+F+R2       10204842.865 72  20409829.730 20409829.742 20410668.082
 80  VT+F+R3       10146199.244 74  20292546.487 20292546.501 20293408.127
 81  VT+F+R4       10140194.442 76  20280540.884 20280540.898 20281425.811
 82  VT+F+R5       10139692.844 78  20279541.688 20279541.702 20280449.902
 83  VT+F+R6       10139673.318 80  20279506.637 20279506.652 20280438.139
 84  VT+F+R7       10139659.646 82  20279483.293 20279483.309 20280438.082
 85  VT+F+R8       10139655.026 84  20279478.052 20279478.069 20280456.129
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          10918097.902 70  21836335.804 21836335.816 21837150.869
 89  LG+G4         10121723.285 52  20243550.569 20243550.576 20244156.046
 90  LG+R2         10184000.538 53  20368107.076 20368107.083 20368724.196
 91  LG+R3         10105933.476 55  20211976.953 20211976.960 20212617.360
 92  LG+R4         10095700.638 57  20191515.276 20191515.284 20192178.971
 93  LG+R5         10094446.038 59  20189010.076 20189010.084 20189697.059
 94  LG+R6         10094305.649 61  20188733.299 20188733.308 20189443.569
 95  LG+R7         10094286.347 63  20188698.693 20188698.703 20189432.251
 96  LG+R8         10094280.846 65  20188691.692 20188691.702 20189448.537
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            10957203.522 51  21914509.043 21914509.049 21915102.876
100  LG+F+G4       10105759.425 71  20211660.851 20211660.863 20212487.559
101  LG+F+R2       10166503.988 72  20333151.975 20333151.987 20333990.327
102  LG+F+R3       10089509.779 74  20179167.557 20179167.571 20180029.197
103  LG+F+R4       10079320.036 76  20158792.072 20158792.086 20159676.999
104  LG+F+R5       10077985.371 78  20156126.741 20156126.756 20157034.956
105  LG+F+R6       10077837.542 80  20155835.083 20155835.099 20156766.585
106  LG+F+R7       10077811.496 82  20155786.992 20155787.008 20156741.781
107  LG+F+R8       10077804.453 84  20155776.906 20155776.923 20156754.984
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          10931477.748 70  21863095.496 21863095.508 21863910.560
111  DCMut+G4      10177315.288 52  20354734.577 20354734.584 20355340.053
112  DCMut+R2      10241429.179 53  20482964.358 20482964.365 20483581.478
113  DCMut+R3      10162185.666 55  20324481.332 20324481.340 20325121.740
114  DCMut+R4      10151621.174 57  20303356.348 20303356.356 20304020.043
115  DCMut+R5      10150000.530 59  20300119.059 20300119.068 20300806.042
116  DCMut+R6      10149710.711 61  20299543.422 20299543.431 20300253.692
117  DCMut+R7      10149679.735 63  20299485.470 20299485.479 20300219.028
118  DCMut+R8      10149674.642 65  20299479.284 20299479.294 20300236.129
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         10993406.412 51  21986914.825 21986914.831 21987508.657
122  DCMut+F+G4    10152986.454 71  20306114.908 20306114.921 20306941.617
123  DCMut+F+R2    10220072.322 72  20440288.645 20440288.657 20441126.997
124  DCMut+F+R3    10137745.027 74  20275638.054 20275638.067 20276499.693
125  DCMut+F+R4    10126562.172 76  20253276.344 20253276.358 20254161.271
126  DCMut+F+R5    10124803.598 78  20249763.196 20249763.211 20250671.411
127  DCMut+F+R6    10124480.418 80  20249120.835 20249120.850 20250052.337
128  DCMut+F+R7    10124453.928 82  20249071.855 20249071.872 20250026.645
129  DCMut+F+R8    10124449.012 84  20249066.023 20249066.040 20250044.100
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       10987220.252 70  21974580.505 21974580.516 21975395.569
133  PMB+G4        10269876.157 52  20539856.314 20539856.320 20540461.790
134  PMB+R2        10315751.707 53  20631609.415 20631609.422 20632226.535
135  PMB+R3        10257479.390 55  20515068.780 20515068.788 20515709.188
136  PMB+R4        10252047.434 57  20504208.868 20504208.875 20504872.563
137  PMB+R5        10251692.134 59  20503502.267 20503502.276 20504189.250
138  PMB+R6        10251676.711 61  20503475.422 20503475.431 20504185.692
139  PMB+R7        10251666.579 63  20503459.158 20503459.168 20504192.716
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           11034982.118 51  22070066.237 22070066.243 22070660.069
144  PMB+F+G4      10246116.356 71  20492374.711 20492374.723 20493201.419
145  PMB+F+R2      10292134.454 72  20584412.908 20584412.921 20585251.260
146  PMB+F+R3      10233088.085 74  20466324.170 20466324.184 20467185.810
147  PMB+F+R4      10227185.635 76  20454523.270 20454523.283 20455408.197
148  PMB+F+R5      10226698.058 78  20453552.117 20453552.131 20454460.331
149  PMB+F+R6      10226675.732 80  20453511.464 20453511.480 20454442.966
150  PMB+F+R7      10226663.939 82  20453491.878 20453491.894 20454446.668
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         11009444.170 70  22019028.340 22019028.352 22019843.404
155  JTTDCMut+G4   10113618.446 52  20227340.892 20227340.899 20227946.369
156  JTTDCMut+R2   10170473.861 53  20341053.723 20341053.729 20341670.843
157  JTTDCMut+R3   10097649.055 55  20195408.110 20195408.117 20196048.517
158  JTTDCMut+R4   10088996.651 57  20178107.301 20178107.309 20178770.996
159  JTTDCMut+R5   10088042.292 59  20176202.584 20176202.593 20176889.567
160  JTTDCMut+R6   10087972.948 61  20176067.896 20176067.905 20176778.166
161  JTTDCMut+R7   10087961.189 63  20176048.377 20176048.387 20176781.935
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      10919025.568 51  21838153.136 21838153.142 21838746.968
166  JTTDCMut+F+G4 10105938.465 71  20212018.931 20212018.943 20212845.639
167  JTTDCMut+F+R2 10163095.672 72  20326335.344 20326335.356 20327173.696
168  JTTDCMut+F+R3 10089728.346 74  20179604.691 20179604.705 20180466.331
169  JTTDCMut+F+R4 10081021.467 76  20162194.934 20162194.948 20163079.861
170  JTTDCMut+F+R5 10079981.856 78  20160119.712 20160119.727 20161027.927
171  JTTDCMut+F+R6 10079905.172 80  20159970.345 20159970.360 20160901.847
172  JTTDCMut+F+R7 10079892.443 82  20159948.887 20159948.903 20160903.676
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    10915865.541 70  21831871.082 21831871.094 21832686.146
177  Blosum62+G4   10274916.228 52  20549936.456 20549936.463 20550541.933
178  Blosum62+R2   10322062.157 53  20644230.314 20644230.321 20644847.434
179  Blosum62+R3   10262607.064 55  20525324.128 20525324.135 20525964.535
180  Blosum62+R4   10256726.917 57  20513567.834 20513567.842 20514231.530
181  Blosum62+R5   10256254.717 59  20512627.435 20512627.443 20513314.418
182  Blosum62+R6   10256234.300 61  20512590.600 20512590.609 20513300.870
183  Blosum62+R7   10256223.893 63  20512573.786 20512573.796 20513307.344
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      11041042.687 51  22082187.374 22082187.380 22082781.206
188  Blosum62+F+G4 10251837.784 71  20503817.567 20503817.580 20504644.276
189  Blosum62+F+R2 10299142.512 72  20598429.024 20598429.036 20599267.376
190  Blosum62+F+R3 10238924.375 74  20477996.750 20477996.763 20478858.389
191  Blosum62+F+R4 10232451.126 76  20465054.251 20465054.265 20465939.178
192  Blosum62+F+R5 10231881.758 78  20463919.516 20463919.530 20464827.730
193  Blosum62+F+R6 10231846.910 80  20463853.820 20463853.835 20464785.322
194  Blosum62+F+R7 10231835.888 82  20463835.777 20463835.793 20464790.566
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    11016059.599 70  22032259.198 22032259.210 22033074.263
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          10161752.787 52  20323609.573 20323609.580 20324215.050
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          10133076.971 57  20266267.941 20266267.949 20266931.636
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        10134026.416 52  20268156.832 20268156.838 20268762.308
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        10075858.700 52  20151821.401 20151821.407 20152426.877
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        10069005.047 52  20138114.095 20138114.101 20138719.571
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
204  LG+C40        10063605.806 52  20127315.612 20127315.619 20127921.089
Model LG+C50 is alias for LG+POISSON+G+FMIX{C50pi1:1:0.0164297003,C50pi2:1:0.0273175755,C50pi3:1:0.0460247610,C50pi4:1:0.0084864734,C50pi5:1:0.0125389252,C50pi6:1:0.0343549036,C50pi7:1:0.0130241102,C50pi8:1:0.0094755681,C50pi9:1:0.0190040551,C50pi10:1:0.0151902354,C50pi11:1:0.0320534760,C50pi12:1:0.0210059850,C50pi13:1:0.0237408547,C50pi14:1:0.0239841203,C50pi15:1:0.0213748021,C50pi16:1:0.0210717705,C50pi17:1:0.0050241805,C50pi18:1:0.0166262276,C50pi19:1:0.0143945956,C50pi20:1:0.0104391130,C50pi21:1:0.0107628277,C50pi22:1:0.0148818171,C50pi23:1:0.0321480239,C50pi24:1:0.0145477978,C50pi25:1:0.0332355807,C50pi26:1:0.0143190281,C50pi27:1:0.0234478734,C50pi28:1:0.0183044983,C50pi29:1:0.0403269452,C50pi30:1:0.0135629530,C50pi31:1:0.0091880799,C50pi32:1:0.0158270022,C50pi33:1:0.0121019379,C50pi34:1:0.0353560982,C50pi35:1:0.0404495617,C50pi36:1:0.0104569232,C50pi37:1:0.0146187792,C50pi38:1:0.0093984095,C50pi39:1:0.0146773809,C50pi40:1:0.0201635562,C50pi41:1:0.0255640273,C50pi42:1:0.0039486842,C50pi43:1:0.0393652608,C50pi44:1:0.0056415419,C50pi45:1:0.0382833580,C50pi46:1:0.0039735086,C50pi47:1:0.0140269355,C50pi48:1:0.0476703673,C50pi49:1:0.0204062788,C50pi50:1:0.0117835304}
205  LG+C50        10059693.722 52  20119491.443 20119491.450 20120096.920
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}
206  LG+C60        10056120.261 52  20112344.523 20112344.530 20112949.999
Akaike Information Criterion:           LG+C60
Corrected Akaike Information Criterion: LG+C60
Bayesian Information Criterion:         LG+C60
Best-fit model: LG+C60 chosen according to BIC

All model information printed to 15cephala_nozorro.phy.model
CPU time for ModelFinder: 73.611 seconds (0h:1m:13s)
Wall-clock time for ModelFinder: 73.909 seconds (0h:1m:13s)
Generating 1500 samples for ultrafast bootstrap (seed: 574072)...
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}

NOTE: 483667 MB RAM (472 GB) is required!
CHECKPOINT: Model parameters restored, LogL: -10056120.262
Computing ML distances based on estimated model parameters... 121.902 sec
Computing BIONJ tree...
0.008 seconds
Log-likelihood of BIONJ tree: -10056507.423
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 8 parsimony trees... 85.275 second
Computing log-likelihood of 8 initial trees ... 4665.971 seconds
Current best score: -10056120.262

Do NNI search on 10 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -10056120.257
Iteration 10 / LogL: -10056265.975 / Time: 14h:8m:5s
Finish initializing candidate tree set (1)
Current best tree score: -10056120.257 / CPU time: 46013.287
Number of iterations: 10
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 20 / LogL: -10056129.948 / Time: 27h:56m:51s
Iteration 30 / LogL: -10056216.306 / Time: 41h:10m:57s (100h:46m:33s left)
Iteration 40 / LogL: -10056182.816 / Time: 55h:17m:1s (86h:26m:14s left)
Iteration 50 / LogL: -10056143.389 / Time: 68h:25m:14s (71h:11m:30s left)
Log-likelihood cutoff on original alignment: -10056183.382
Iteration 60 / LogL: -10056163.384 / Time: 82h:26m:2s (57h:16m:13s left)
Iteration 70 / LogL: -10056861.273 / Time: 95h:47m:23s (43h:1m:36s left)
Iteration 80 / LogL: -10056180.016 / Time: 108h:33m:11s (28h:51m:1s left)
Iteration 90 / LogL: -10056143.687 / Time: 121h:33m:38s (15h:1m:18s left)
Iteration 100 / LogL: -10056196.338 / Time: 134h:58m:46s (1h:21m:47s left)
Log-likelihood cutoff on original alignment: -10056183.382
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 1.000
Total number of trees received: 0
Total number of trees sent: 0
Total number of NNI searches done by myself: 102
TREE SEARCH COMPLETED AFTER 102 ITERATIONS / Time: 137h:25m:12s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -10056120.257
Optimal log-likelihood: -10056120.256
Mixture weights: 0.017 0.021 0.028 0.007 0.014 0.007 0.015 0.007 0.002 0.010 0.023 0.006 0.013 0.020 0.007 0.012 0.007 0.043 0.032 0.022 0.010 0.015 0.013 0.015 0.024 0.013 0.022 0.025 0.021 0.011 0.008 0.013 0.009 0.047 0.044 0.032 0.040 0.015 0.010 0.021 0.015 0.010 0.023 0.012 0.007 0.001 0.034 0.011 0.013 0.012 0.026 0.006 0.010 0.014 0.022 0.020 0.004 0.011 0.013 0.012
Gamma shape alpha: 0.260
Parameters optimization took 1 rounds (653.540 sec)
BEST SCORE FOUND : -10056120.256
Creating bootstrap support values...
Split supports printed to NEXUS file 15cephala_nozorro.phy.splits.nex
Total tree length: 9.252

Total number of iterations: 102
CPU time used for tree search: 24089460.729 sec (6691h:31m:0s)
Wall-clock time used for tree search: 489839.707 sec (136h:3m:59s)
Total CPU time used: 24354270.531 sec (6765h:4m:30s)
Total wall-clock time used: 495366.679 sec (137h:36m:6s)

Computing bootstrap consensus tree...
Reading input file 15cephala_nozorro.phy.splits.nex...
27 taxa and 53 splits.
Consensus tree written to 15cephala_nozorro.phy.contree
Reading input trees file 15cephala_nozorro.phy.contree
Log-likelihood of consensus tree: -10056120.256

Analysis results written to: 
  IQ-TREE report:                15cephala_nozorro.phy.iqtree
  Maximum-likelihood tree:       15cephala_nozorro.phy.treefile
  Likelihood distances:          15cephala_nozorro.phy.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          15cephala_nozorro.phy.splits.nex
  Consensus tree:                15cephala_nozorro.phy.contree
  Screen log file:               15cephala_nozorro.phy.log

Date and Time: Sun Aug 25 03:42:44 2019
